Re: [Freesurfer] Bug Reporting: recon-all -s 001 exited with ERRORS

2017-11-13 Thread Hoopes, Andrew
Hi Rosalia, What version of perl are you using? Based on this thread from last year - https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2016-May/045407.html - it seems like this is a known issue with new versions of perl and freesurfer v5.3. Unfortunately, your only two options are to inst

Re: [Freesurfer] Bug Reporting: recon-all -s 001 exited with ERRORS

2017-11-13 Thread Douglas N Greve
Is this happening on all subjects or just this one? If just this one, have you looked at the images to make sure that there is nothing really wrong? On 11/12/2017 12:56 PM, Rosalia Dacosta Aguayo wrote: > My apologizes, > > I missed forgot to include the following information: > > 1. FreeSurfe

Re: [Freesurfer] Bug Reporting: recon-all -s 001 exited with ERRORS

2017-11-12 Thread Rosalia Dacosta Aguayo
My apologizes, I missed forgot to include the following information: 1. FreeSurfer version: freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0 2. Platform: CentOS release 6.7 3. uname -a: Linux rosalia-PORTEGE-Z930 4.4.0-98-generic #121-Ubuntu SMP Tue Oct 10 14:24:03 UTC 2017 x86_64 x86_64 x86_64

[Freesurfer] Bug Reporting: recon-all -s 001 exited with ERRORS

2017-11-12 Thread Rosalia Dacosta Aguayo
​Hello FreeSurfer Developers, I am attempting ​to compute autorecon1 in a subject to see how it works recon-all in a stepwise as described in the tutorial. Sorry if this is a very naive question but it is the first time I am trying to run an analysis with FreeSurfer. After running: *r* *econ-all