Re: [Freesurfer] Building Freesurfer dev with GPU support/CUDA enabled

2017-03-01 Thread zkaufman
Hello Francis, Yes, Richard is correct. When doing a local installation you will need the freesurfer data files which do not come with a default clone of the repo. Please see section 1.1 of the build page: $> https://surfer.nmr.mgh.harvard.edu/fswiki/freesurfer_linux_developers_page To get

Re: [Freesurfer] Building Freesurfer dev with GPU support/CUDA enabled

2017-03-01 Thread R Edgar
On 1 March 2017 at 03:28, Francis Tyson Thomas wrote: > I have attached the log file as you had requested. This is the error: gzip: testdata.tar.gz: No such file or directory tar: This does not look like a tar archive tar: Exiting with failure status due to

Re: [Freesurfer] Building Freesurfer dev with GPU support/CUDA enabled

2017-03-01 Thread Francis Tyson Thomas
Hi Z K, I went ahead and tried your suggestion of running *make install *and these are errors I have, mv ../../distribution/average/?h.EC_average \ /home/tyson/tyson/fs_install/subjects chmod -R 775 /home/tyson/tyson/fs_install/subjects/?h.EC_average rm -Rf

Re: [Freesurfer] Building Freesurfer dev with GPU support/CUDA enabled

2017-03-01 Thread Francis Tyson Thomas
Hi Richard, I have attached the log file as you had requested. Thanks, On Tue, Feb 28, 2017 at 3:36 AM, R Edgar wrote: > On 28 February 2017 at 01:10, Francis Tyson Thomas > wrote: > > >

Re: [Freesurfer] Building Freesurfer dev with GPU support/CUDA enabled

2017-02-28 Thread Z K
We are building up our testing infrastructure and as it currently stands it may still be a little too catered to our specific build environment. If freesurfer builds for you than I would skip the 'make check' stage. The best sanity check would be to make a copy of the bert subject folder,

Re: [Freesurfer] Building Freesurfer dev with GPU support/CUDA enabled

2017-02-28 Thread R Edgar
On 28 February 2017 at 01:10, Francis Tyson Thomas wrote: > > See utils/test/mriBuildVoronoiDiagramFloat/test-suite.log > Please report to freesurfer@nmr.mgh.harvard.edu >

[Freesurfer] Building Freesurfer dev with GPU support/CUDA enabled

2017-02-27 Thread Francis Tyson Thomas
Hi, I have been trying to build the freesurfer dev version with GPU support as per the information I had from my previous try a couple of months ago that Richard help me to successfully complete and I have not been successful in that. I followed the instructions from