[Freesurfer] Cerebellar Segmentation Definitions

Hi FS Experts, I am planning to use the cerebellar segmentations in the routine recon-all which parcellates the cerebellum into cerebellar-white-matter and cerebellar-gray-matter. I am trying to define the two terms, as it appears that the cerebellar-white-matter label includes much if not all

Re: [Freesurfer] Cerebellar Segmentation Definitions

The cerebellar GM is just cerebellar cortex and does not include those deep gray structures. I don't know if we have a description of the manual labeling protocol. The closest you are going to come to is this paper (unless Bruce knows differently) https://pubmed.ncbi.nlm.nih.gov/11832223/ On

Re: [Freesurfer] Cerebellar Segmentation Definitions

Hi Doug, Thanks for your reply. Would it be safe to say that these deep grey nuclei are included in the cerebellar white matter? Thanks, Mitch ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo

Re: [Freesurfer] Cerebellar Segmentation Definitions

Yes On 1/26/2021 11:58 AM, Horn, Mitchell Jacob wrote: Hi Doug, Thanks for your reply. Would it be safe to say that these deep grey nuclei are included in the cerebellar white matter? Thanks, Mitch ___ Freesurfer mailing list Freesurfer@nmr.mg