Re: [Freesurfer] Computing thickness from woT2.pial surfaces {Disarmed}

2020-12-11 Thread Antonín Škoch
External Email - Use Caution Hi, Bruce, I did not find any mris_thickness command line option for masking medial wall during thickness computation. The masking of ?h.thickness file ex post would not probably help, since it is not equivalent. I tested this by running mris_anatomi

Re: [Freesurfer] Computing thickness from woT2.pial surfaces {Disarmed}

2020-12-11 Thread Fischl, Bruce
Hi Antonin Sorry for the trouble. We can add a -mask option to it going forward Cheers Bruce From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of Antonín Škoch Sent: Friday, December 11, 2020 1:16 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Computing thickness from