Dear all:
While reconstructing monkey brain with FreeSurfer, in the stage of
autorecon2, I used 'noaseg' option to avoid the segmentation. The command is
as follows:
recon-all -s monkey_040409632 -autorecon2 -noaseg -cc-crs 128 117 123
-pons-crs 128 154 108
However, FreeSurfer finally reported me a confusing 'ERROR: cannot find
aseg.mgz' and exited. In my mind, FS should know that aseg.mgz does not
exist.
What's this error mean?
Thanks.
The details of the error are as follows:
#...@# Cortical ribbon mask Sun Mar 8 14:22:24 CST 2009
/nfs/h1/r3/Subjects/monkey_040409632/mri
mris_volmask --label_left_white 2 --label_left_ribbon 3 --label_right_white
41 --label_right_ribbon 42 --save_ribbon --save_distance monkey_040409632
SUBJECTS_DIR is /nfs/h1/r3/Subjects
Exception caught while processing input files
7IoError
loading input data...
ERROR: cannot find /nfs/h1/r3/Subjects/monkey_040409632/mri/aseg.mgz
Linux annex.cnl 2.6.9-42.ELsmp #1 SMP Tue Aug 15 10:35:26 BST 2006 x86_64
x86_64 x86_64 GNU/Linux
recon-all exited with ERRORS at Sun Mar 8 14:22:36 CST 2009
--
Zonglei Zhen, PhD
Assistant Professor of Cognitive Neuroscience
BNU Imaging Center for Brain Research, State Key Laboratory of Cognitive
Neuroscience and Learning, P.R. China
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