Re: [Freesurfer] Contrast to Noise Ratio - mri_glmfit vs. selxavg3-sess

2017-12-21 Thread Douglas N Greve
In mri_glmfit, this is just the contrast value (gamma) divided by the residual stddev (rstd), and something similar for the selxavg3-sess. In mri_glmfit, the residual is the residual of the group model; in selxavg it is the residual from the timer series modeling, so they are very different

[Freesurfer] Contrast to Noise Ratio - mri_glmfit vs. selxavg3-sess

2017-12-21 Thread shahin
Hi Surfers, As you know, there are multiple ways to measure contrast to noise ration (CNR). I am trying to understand how is cnr.nii generated as an output from mri_glmfit command. I also noticed that, cnr.nii values are mostly NaN when I have one subject only. I am wondering why it is not