none of our tools use the nifti origin (and we don't have a way to set
it). Do you need it for something else? FSL or SPM may have tools that
can set it
On 03/07/2014 02:40 PM, Oualid Benkarim wrote:
> I have a expert segmentation and i want to transform this file to GCA
> space. However, i fi
I have a expert segmentation and i want to transform this file to GCA
space. However, i first need to have the segmentation in conformed space
cause the segmentation is 256x256x278 1mm and has a different origin. I
tried the following:
>> mri_convert -rl orig.mgz -rt nearest mySeg.nii.gz mySeg_con
Hi Mohamed
the segmentations are in the individual subject "conformed" space. The
talairach.m3z is what is used to transform GCA to the conformed coords
cheers
Bruce
On Mon, 3
Mar 2014, Mohamed Oualid Benkarim wrote:
> Hi all,
>
> I've performed FS subcortical segmentation and my purpose is
Hi all,
I've performed FS subcortical segmentation and my purpose is to use these
segmentations as seeds to another method.
As FS uses GCA atlas to perform subcortical segmentation, I want to know if
the *aseg.mgz* output is in GCA atlas space,
or in original space except that the dimensions are 2
