Hi Sofia
you should be able to "reslice like" the rawavg.mgz:
mri_convert -rl rawavg.mgz brainmask.mgz brainmask.rawavg.mgz
you might also want to specify the interpolation as e.g. nearest with -rt
nearest (trilinear is the default I believe)
On Tue, 24 Jul 2018,
Sofia Rodriguez Penuela wrot
External Email - Use Caution
Hello team,
We have first fixed non-cortex voxels in the pial surface using the
brainmask.mgz volume, and we next corrected pial surfaces that
mistakenly included cerebellum by creating a copy of
'brain.finalsurfs.mgz' named 'brain.finalsurfs.manedit.
