Re: [Freesurfer] Cortical thickness/surface area in volume-defined ROIs

2013-12-02 Thread Anita van Loenhoud
Hi Bruce, Thank you for your response. Now at least I know what went wrong; I'll try your solution. Thanks! Anita ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information

[Freesurfer] Cortical thickness/surface area in volume-defined ROIs

2013-11-29 Thread Anita van Loenhoud
Dear Freesurfer experts, I want to use volume-defined ROIs (obtained in a VBM study) to extract mean thickness and surface area, in a total group of 138 participants. I followed the tutorial 'Cortical Thickness of a volume-defined ROI'. I have a few questions regarding this analysis: 1. The

Re: [Freesurfer] Cortical thickness/surface area in volume-defined ROIs

2013-11-29 Thread Rujing Zha
Dear Anita, Would you please tell me where I can find Cortical Thickness of a volume-defined ROI? Thanks, All the best. 2013-11-29 Rujing Zha 发件人:Anita van Loenhoud acvanloenh...@gmail.com 发送时间:2013-11-29 21:51 主题:[Freesurfer] Cortical thickness/surface area in volume-defined ROIs 收件人

Re: [Freesurfer] Cortical thickness/surface area in volume-defined ROIs

2013-11-29 Thread Anita van Loenhoud
Hi Rujing Zha, Click this link: http://freesurfer.net/fswiki/VolumeRoiCorticalThickness Anita ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is

Re: [Freesurfer] Cortical thickness/surface area in volume-defined ROIs

2013-11-29 Thread Bruce Fischl
Hi Anita the problem is that the cortex is not well aligned in the avg152 space, and so a volume-defined ROI will not follow the contours of the cortex well. Not sure that there's much you can do about this except possibly map the ROI back to the individual subjects, and recreate it in

Re: [Freesurfer] Cortical thickness/surface area in volume-defined ROIs

2013-11-29 Thread Rujing Zha
Dear, I get it. Thanks. All the best. 2013-11-29 Rujing Zha 发件人:Anita van Loenhoud acvanloenh...@gmail.com 发送时间:2013-11-29 22:18 主题:Re: [Freesurfer] Cortical thickness/surface area in volume-defined ROIs 收件人:freesurferfreesurfer@nmr.mgh.harvard.edu 抄送: Hi Rujing Zha, Click this link