Re: [Freesurfer] Creating an illustration on what Freesurfer has considered to be intracranial volume

2017-04-04 Thread Melanie Ganz
Dear Erik, since I just worked on the details of this, please have a look at http://www.freesurfer.net/fswiki/eTIV to clarify that FreeSurfer does not use any segmentation to make the eTIV estimation on, but uses the talairach transfom to estimate the eTIV since the two have a linear relation

[Freesurfer] Creating an illustration on what Freesurfer has considered to be intracranial volume

2017-04-04 Thread Erik Lindberg
Dear Freesurfer experts, I would like to create an image on tissue that Freesurfer has been included into the intracranial volume calculation. Is there anyway to summarize segmentations masks so I get one mask containing all tissue that has been included into the intracranial volume? best Erik __