Dear Doug,
I am sorry, the problem with missing perirhinal label in .annot was due to typo
in my .ctab file (also seen in my previous mail). Now it works OK.
I have already solved my problem by creating annotation just of entorhinal and
perirhinal labels (like I wrote in my post here:
I cannot replicate the missing last label. Can you upload the relevant
data so I can take a look? Using the --l instead should work too. For
your other problem, I would probably run mri_label2label with the
--outstat option to create an overlay of the statistic, then create a
segmentation
Dear Doug,
I am using quite recent dev version built 8/2/2017.
mris_label2annot of this version is following:
$Id: mris_label2annot.c,v 1.20 2016/01/07 23:28:11 greve
Regards,
Antonin
what version are you using? I thought I fixed the missing-last-label
problem in v6
On 03/01/2017 06:42 PM,
what version are you using? I thought I fixed the missing-last-label
problem in v6
On 03/01/2017 06:42 PM, Antonin Skoch wrote:
> Dear Doug,
>
> thank you, adding --no-unknown indeed fixed the global shuffling of
> the label names. However, last line of .ctab seems not to be read this
> time
Dear Doug,
thank you, adding --no-unknown indeed fixed the global shuffling of the label
names. However, last line of .ctab seems not to be read this time and produced
.annot does not contain perirhinal label.
My modified .ctab file looks like this:
0 Unknown 0
Try adding --no-unknown to the label2annot command line
On 02/28/2017 04:45 PM, Antonin Skoch wrote:
> Dear experts,
>
> I would like to create modified aparc.a2009s+aseg file with relevant
> parts of parahippocampal cortical ribbon voxel labels replaced by
> labels derived from surface labels
Hi Antonin, I've verified the problem and am working on a solution.
doug
On 02/28/2017 04:45 PM, Antonin Skoch wrote:
> Dear experts,
>
> I would like to create modified aparc.a2009s+aseg file with relevant
> parts of parahippocampal cortical ribbon voxel labels replaced by
> labels derived
Dear experts,
I would like to create modified aparc.a2009s+aseg file with relevant parts of
parahippocampal cortical ribbon voxel labels replaced by labels derived from
surface labels of entorhinal and parahippocampal cortex (created also by
default in recon-all). This modified
