Re: [Freesurfer] Definition of circular label centered on peak vertex

2018-10-05 Thread Greve, Douglas N.,Ph.D.
you can create a label with just that vertex, then use mri_label2label to dilate it, then use mri_segstats specifying the label with --slabel, using beta as input (--i), and specifying the output as --avfwf. Run it with --help to get more info On 10/5/18 11:10 AM, Milde, Christopher wrote:

[Freesurfer] Definition of circular label centered on peak vertex

2018-10-05 Thread Milde, Christopher
External Email - Use Caution Dear FS experts I`m interested in extracting beta values from a FSFAST analysis performed in the subject`s native space. The beta values shall be extracted from a circular label around the peak vertex. How can you define a circular label centered

Re: [Freesurfer] Definition of circular label centered on peak vertex

2018-10-05 Thread Bruce Fischl
Hi Chris if you can find the peak vertex you can create a single vertex label from it, then use mri_label2label --dilate N to create an approximation of an N-radius circle cheers Bruce On Fri, 5 Oct 2018, Milde, Christopher wrote: External Email - Use Caution Dear FS