Re: [Freesurfer] DenoiseImage shifting scan orientation

2022-04-09 Thread Douglas N. Greve
have you tried asking the ANTS people? On 4/6/2022 10:05 AM, Nathan Kindred (PGR) wrote: External Email - Use Caution Hi, I have been using DenoiseImage from ANTs during pre-processing (DenoiseImage -i T1.nii -o denoised.nii.gz -v), however for some scans I am having an issue where

[Freesurfer] DenoiseImage shifting scan orientation

2022-04-06 Thread Nathan Kindred (PGR)
External Email - Use Caution Hi, I have been using DenoiseImage from ANTs during pre-processing (DenoiseImage -i T1.nii -o denoised.nii.gz -v), however for some scans I am having an issue where this step is changing the scan orientation. The scans appear shifted so they now no