[Freesurfer] Directed search for group analysis

2012-07-23 Thread Jeni Chen
Hello Freesurfer experts, I've been trying to figure out a way to run a directed search in a group analysis. I read the tutorial on ROI analysis and some of the posts here, but we can only do it with individual subject. Simply pout, I want to restrict my search areas to 4 ROIs (determined from

Re: [Freesurfer] Directed search for group analysis

2012-07-23 Thread Douglas Greve
The only difference between the mask and the label is the format of the input. The mask can take any volume format (mgh, nii, etc) and expects there to be a value at each veretx, and that value is a 0 or 1. The label is a text list of vertices to include (like lh.cortex.label). If your ROIs