[Freesurfer] Dura, manual editing, mri_gcut

2011-04-12 Thread roger . jou
Hi all, Sorry for the newbie questions, but I was wondering if there were any general guidelines on how much remaining DURA MATER and ARACHNOID MATER is acceptable after running autorecon1. In general, should dura be completely removed and arachnoid be left as is? Also, is mri_gcut run

Re: [Freesurfer] Dura, manual editing, mri_gcut

2011-04-12 Thread Bruce Fischl
Hi Roger, you certainly don't need to remove all of it - only the pieces that are erroneously retained within the pial surface. As for gcut, it depends on what version you are using whether it is run automatically. cheers Bruce On Tue, 12 Apr 2011 roger@yale.edu wrote: Hi all, Sorry