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I would extract the rs-fMRI timeseries from Yeo’s Network components.
I’m running:
preproc-sess -s ${1} -fsd rest -sliceorder up -surface self lhrh -fwhm 0
-per-run
fcseed-config -wm -fcname wm.dat -fsd rest -pca -cfg wm.config
fcseed-sess -s ${1} -cfg wm.config
fcseed-config -vcsf -fcname vcsf.dat -fsd rest -pca -cfg vcsf.config
fcseed-sess -s ${1} -cfg vcsf.config
mkanalysis-sess -analysis fc.noseed.surf.lh -surface self lh -fwhm 0 -notask
-nuisreg vcsf.dat 5 -nuisreg wm.dat 5 -polyfit 5 -nskip 4 -mcextreg -fsd rest
-TR 1.67 -per-run -hpf 0.01 -lpf 0.1 -nowhiten
mkanalysis-sess -analysis fc.noseed.surf.rh -surface self rh -fwhm 0 -notask
-nuisreg vcsf.dat 5 -nuisreg wm.dat 5 -polyfit 5 -nskip 4 -mcextreg -fsd rest
-TR 1.67 -per-run -hpf 0.01 -lpf 0.1 -nowhiten
The line below produced this error:
selxavg3-sess -s ${1} -a fc.noseed.surf.lh -no-con-ok -svres
Saving rho1 ERROR: fast_mat2vol: szvol inconsistent with mat2d nv = 151008,
size(mat,2) = 142954 run 2 t= 1.6reading data ... 0.518631Temporally
filteringSaving rho1 ERROR: fast_mat2vol: szvol inconsistent with mat2d nv =
151008, size(mat,2) = 142954
Found 0 voxels with corrected AR1 > 0.90Not WhiteningFound 8054 zero-valued
voxelsComputing contrasts
The res folder in fc.noseed.surf.lh or fc.noseed.surf.rh contains
res-001.nii.gz 158KB
res-002.nii.gz 158KB
that cannot be opended.
Thanks
Stefano
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