Re: [Freesurfer] ERROR: flirt in bbr Matlab Execution

2019-04-25 Thread Pfannmoeller, Joerg Peter
: flirt in bbr Matlab Execution Don't use --best anymore, it is depricated. There should be no need to specify an initialization (unless it is to initialize it with the header geometry). Under the hood, it will use mri_coreg (a shameless copy of spmreg). On 4/24/2019 7:07 PM, Pfannmoeller,

Re: [Freesurfer] ERROR: flirt in bbr Matlab Execution

2019-04-24 Thread Greve, Douglas N.,Ph.D.
Don't use --best anymore, it is depricated. There should be no need to specify an initialization (unless it is to initialize it with the header geometry). Under the hood, it will use mri_coreg (a shameless copy of spmreg). On 4/24/2019 7:07 PM, Pfannmoeller, Joerg Peter wrote: Hello, I have a p

[Freesurfer] ERROR: flirt in bbr Matlab Execution

2019-04-24 Thread Pfannmoeller, Joerg Peter
Hello, I have a problem with bbregister and the option --init-best. In the current dev version of freesurfer 6 the processing stops with the error message: terminate called after throwing an instance of 'NEWMAT::SingularException' Abort (core dumped) ERROR: flirt if I run bbr using Matlab and t