Hello. FreeSurfer newbie here. I have a data set of 14 subjects. I’ve
successfully run recon-all on 12 subjects but 2 are giving me the same error
message:
ERROR: mritotal failed, see transforms/talairach.log
Beneath that it says:
For more details, see the log file
/Users/kathleen/Docum
Hi Freesurfer Community,
I was trying to run the recon-all for one of the subjects. I got following
error message:
"ERROR: mritotal failed, see transforms/talairach.log".
The image seems to have some missing hippocampal area. I wonder If we can
still run the recon-all?
I checked previous archive
Hello Kathleen,
The mritotal program is only run after our primary talairach alignment
utility fails. Make sure your 'orig.mgz' looks 'good',
that it, like the orig.mgz does in the sample subject 'bert': full head
view with good orientation, and decent gm/wm contrast.
If it is ok, then a workaro
See this web page
https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/Talairach_freeview
On 03/01/2017 09:48 AM, Hari Guragain wrote:
> Hi Freesurfer Community,
>
> I was trying to run the recon-all for one of the subjects. I got
> following error message:
> "ERROR: mritotal failed, see transf
