Re: [Freesurfer] Error During Fix Topology and Brain Usability

2020-12-23 Thread Greve, Douglas N.,Ph.D.
I don't think it is worth doing a surface-based analysis on this subject. The subcortical may be salvageable On 12/16/2020 11:55 AM, Angel Hammond wrote: External Email - Use Caution Dear Experts, I have a brain that I have been getting an error for during fix topology during

[Freesurfer] Error During Fix Topology and Brain Usability

2020-12-16 Thread Angel Hammond
External Email - Use Caution Dear Experts, I have a brain that I have been getting an error for during fix topology during recon-all using Freesurfer 6.0 on macOS Catalina. I have read a couple of threads on this same kind of error on the Freesurfer list and it seems this is

[Freesurfer] Error during Fix Topology

2010-02-22 Thread Joonkoo Park
Dear FreeSurfers, I got an error during Fix Topology step (seems like from the right hemisphere) in the recon-all process (see below for more information). I searched the ListServ and learned from other email threads that this may be due to incorrect segmentation of WM or Cerebellum, or possibly

Re: [Freesurfer] Error during Fix Topology

2010-02-22 Thread Bruce Fischl
Hi Joon the last defect is pretty big. Did you check the filled.mgz to make sure that nothing is drastically wrong such as the skull or cerebellum being attached to cortex? cheers Bruce On Mon, 22 Feb 2010, Joonkoo Park wrote: Dear FreeSurfers, I got an error during Fix Topology step