Hi List,
I am getting the following error when running recon-all lgi for local
gyrification index.
I have changed the script in matlab as we are using matlab 2013b as
mentioned in the previous thread.
I am attaching the script.
Please let me know what else to do.
Thanks Regards
Meenal Budhiraja
PhD student
Karolinska Institute
Stockholm,Sweden.
preparing pial mesh structure ...
...searching for mesh edges...done (349.20 sec).
... creating path file for vertex 1 / 66330
area file for outer ROIs saved at 1
Improper assignment with rectangular empty matrix.
Error in dsearchn (line 79)
[d(i),t(i)] = min(sum((x-yi).^2,2));
Error in mesh_vertex_nearest (line 29)
nearestIndex = dsearchn(vertices,points);
Error in reorganize_verticeslist (line 28)
[nextindex,nextvalue]=mesh_vertex_nearest(mesh_total.vertices(remaininglist,:),mesh_total.vertices(verticeslist(start_vertex),:));
Error in make_roi_paths (line 93)
reorglist = reorganize_verticeslist (mesh_total, A, mesh_outer, perim,
verticeslist, step);
>>
ERROR: make_roi_paths did not complete successfully!
function [verticeslist]=SearchProjectionOnPial(mesh_total,mesh_outer,perim, step)
% step is typically set between 5 and 10. Default is 7, increasing it will
% limit redundancies in the resulting path file.
verticeslist=[];
si=max(size(perim));
for t=1:step:si
[nearestIndexMT,nearestValuesMT]=mesh_vertex_nearest(mesh_total.vertices,mesh_outer.vertices(perim(t),:));
verticeslist= [verticeslist nearestIndexMT];
end
verticeslist=unique(verticeslist);
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