Re: [Freesurfer] Errors preprocess

2018-07-11 Thread Lee, Seonjoo
Subject: Re: [Freesurfer] Errors preprocess Hi Seonjoo, What directory are you in when you run preproc-sess? You should run this command from the data/ dir. Emma - Emma Boyd Research Technician II Laboratory for Computational Neuroimaging Martinos Center for Biomedical Imaging

Re: [Freesurfer] Errors preprocess

2018-07-11 Thread Boyd, Emma
: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Lee, Seonjoo Sent: Wednesday, July 11, 2018 8:26 AM To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Errors preprocess External Email - Use Caution Dear Freesurfer experts, I tried to run preproc-sess but did not have much luck

[Freesurfer] Errors preprocess

2018-07-11 Thread Lee, Seonjoo
External Email - Use Caution Dear Freesurfer experts, I tried to run preproc-sess but did not have much luck to make it work. I converted resting fmri file into .nii, and I created the following directory structure and it’s stored under /data/sub1/rest/001/fMRI.nii: /data /data