Hi, I'm trying to apply a transform that was generated between a native subject's T1 and the cvs_avg35_inMNI152 brain. Per the instructions on the mri_cvs_register page, I ran the transformation, but did not save the .fullCVSmorph.t3md file, so I'd like to regenerate it. Here's my command for doing so:
createMorph --out fullCVSmorph.tm3d --template /data/cvs_avg35_inMNI152/mri/brain.mgz --subject /data/orig_subj/mri/brain.mgz --in gcam /data/orig_subj/cvs/final_CVSmorph_tocvs_avg35_inMNI152.m3z morph el_reg_tocvs_avg35_inMNI152.tm3d which produces the following output: atlas geometry = 256 , 256 , 256 image geometry = 256 , 256 , 256 vox 2 ras atlas = -1.000 0.000 0.000 127.000; 0.000 0.000 1.000 -145.000; 0.000 -1.000 0.000 147.000; 0.000 0.000 0.000 1.000; ras 2 vox image = -1.000 0.000 0.000 127.000; -0.000 -0.000 -1.000 147.000; -0.000 1.000 -0.000 145.000; 0.000 0.000 0.000 1.000; product = 1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 0.000; 0.000 0.000 0.000 1.000; transform at origin 0.000; 0.000; 0.000; 1.000; invalid voxel count = 11890277 extension = tm3d Exception caught while loading morph in file el_reg_tocvs_avg35_inMNI152.tm3d -------- This code runs fine for other subjects, so I'm not sure what's wrong here. Does anyone have any suggestions? Thanks, Matt Matthew K. Leonard, PhD Postdoctoral Fellow Department of Neurological Surgery University of California, San Francisco http://changlab.ucsf.edu/
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