Re: [Freesurfer] Extract overlay value from fsaverage ROIs

2009-01-28 Thread Nick Schmansky
Christine, This would do it: mri_segstats --annot fsaverage lh aparc --i sig.mgh --sum out.txt where this will find the means for the 'aparc' ROI's, for the input file sig.mgh (assuming it was produced by some group analysis, like mri_glmfit or qdec), and produces output text file out.txt. Nick

[Freesurfer] Extract overlay value from fsaverage ROIs

2009-01-28 Thread Christine Ecker
Hi, Just wondering whether it is possible to extract values from an overlay created on fsaverage for aparc parcellated regions e.g. the mean of a statistical test parameter for specific aparc ROIs? I know it is possible to extract values for individual subjects on the basis of fsaverage ROIs, but