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Subject: Re: [Freesurfer] Extracting DTI/NODDI data from hippocampal subfields
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Eugenio,
Not sure if there is any interest in this, but here is our code for converting
the data into T1 NIFTI space.
Thanks for the help,
Mark
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Subject: Re: [Freesurfer] Extracting DTI/NODDI data from hippocampal subfields
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Hi again,
You pick the most probable label at each voxel. In a binary segmentation
problem, that amounts to thresholding at 50%. By with more labels, it does not,
e
ent from my phone, please excuse brevity and typos
From: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of Mark Wagshul
Sent: Friday, May 4, 2018 12:24:36 AM
To: Freesurfer support list
Subject: Re: [Freesurfer] Extracting DTI/NODDI data from hippocampal subfie
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Eugenio,
Yes, we are on the same page, thank you so much for the advice.
One followup question - is the threshold on the binary masks 50%?
Mark
___
Mark Wagshul, PhD
Albert Einstein College of Medicine
Bronx, NY
Sent from my iPh
://cmictig.cs.ucl.ac.uk/
From: on behalf of Mark Wagshul
Reply-To: Freesurfer support list
Date: Thursday, 3 May 2018 at 21:29
To: Freesurfer support list
Subject: Re: [Freesurfer] Extracting DTI/NODDI data from hippocampal subfields
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Eugenio,
Sorry I have a few
...@nmr.mgh.harvard.edu] On Behalf Of Iglesias Gonzalez,
Eugenio
Sent: Thursday, May 3, 2018 3:47 AM
To: Freesurfer support list
Subject: Re: [Freesurfer] Extracting DTI/NODDI data from hippocampal subfields
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Dear Mark,
Just to make sure we’re on the same page: I’ll say that two
External Email - Use Caution
Eugenio,
Yes, we are on the same page, thank you so much for the advice.
One followup question - is the threshold on the binary masks 50%?
Mark
___
Mark Wagshul, PhD
Albert Einstein College of Medicine
Bronx, NY
Sent from my iPh
:57
To: "freesurfer@nmr.mgh.harvard.edu"
Subject: [Freesurfer] Extracting DTI/NODDI data from hippocampal subfields
External Email - Use Caution
Hi. I am just getting my feet wet with running my subjects through the
Freesurfer processing stream, so the following question nigh
External Email - Use Caution
Hi. I am just getting my feet wet with running my subjects through the
Freesurfer processing stream, so the following question night be a bit trivial
(I hope):
I have run qvlSegmentHippocampal subfields on one of my subjects, and it
completed just
