support list
Subject: Re: [Freesurfer] Extracting DTI/NODDI data from hippocampal subfields
External Email - Use Caution
Eugenio,
Not sure if there is any interest in this, but here is our code for converting
the data into T1 NIFTI space.
Thanks for the help,
Mark
surfer support list
Subject: Re: [Freesurfer] Extracting DTI/NODDI data from hippocampal subfields
External Email - Use Caution
Hi again,
You pick the most probable label at each voxel. In a binary segmentation
problem, that amounts to thresholding at 50%. By with more labels, it does not,
e
ent from my phone, please excuse brevity and typos
From: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of Mark Wagshul
Sent: Friday, May 4, 2018 12:24:36 AM
To: Freesurfer support list
Subject: Re: [Freesurfer] Extracting DTI/NODDI data from hippocampal subfie
External Email - Use Caution
Eugenio,
Yes, we are on the same page, thank you so much for the advice.
One followup question - is the threshold on the binary masks 50%?
Mark
___
Mark Wagshul, PhD
Albert Einstein College of Medicine
Bronx, NY
Sent from my iPh
://cmictig.cs.ucl.ac.uk/
From: on behalf of Mark Wagshul
Reply-To: Freesurfer support list
Date: Thursday, 3 May 2018 at 21:29
To: Freesurfer support list
Subject: Re: [Freesurfer] Extracting DTI/NODDI data from hippocampal subfields
External Email - Use Caution
Eugenio,
Sorry I have a few
...@nmr.mgh.harvard.edu] On Behalf Of Iglesias Gonzalez,
Eugenio
Sent: Thursday, May 3, 2018 3:47 AM
To: Freesurfer support list
Subject: Re: [Freesurfer] Extracting DTI/NODDI data from hippocampal subfields
External Email - Use Caution
Dear Mark,
Just to make sure we’re on the same page: I’ll say that two
External Email - Use Caution
Eugenio,
Yes, we are on the same page, thank you so much for the advice.
One followup question - is the threshold on the binary masks 50%?
Mark
___
Mark Wagshul, PhD
Albert Einstein College of Medicine
Bronx, NY
Sent from my iPh
:57
To: "freesurfer@nmr.mgh.harvard.edu"
Subject: [Freesurfer] Extracting DTI/NODDI data from hippocampal subfields
External Email - Use Caution
Hi. I am just getting my feet wet with running my subjects through the
Freesurfer processing stream, so the following question nigh
External Email - Use Caution
Hi. I am just getting my feet wet with running my subjects through the
Freesurfer processing stream, so the following question night be a bit trivial
(I hope):
I have run qvlSegmentHippocampal subfields on one of my subjects, and it
completed just