Re: [Freesurfer] Extracting GWC values from mask

2022-11-17 Thread Douglas N. Greve
try this mri_segstats --seg lh.SignificantAreaOfROI.sig.mgh  --i lh.w-g.pct.mgh --id 1 --sum sum.dat On 11/3/2022 2:08 PM, Fulton, Travis wrote: External Email - Use Caution Hello FreeSurfer Developers, I am trying to extract gray/white contrast stats for a specific area within a co

[Freesurfer] Extracting GWC values from mask

2022-11-03 Thread Fulton, Travis
External Email - Use Caution Hello FreeSurfer Developers, I am trying to extract gray/white contrast stats for a specific area within a cortical region. I was able generate a mask of the significant area with: mri_binarize --i lh.RegionOfInterest.sig.mgh --o lh.SignificantAreaOf