[Freesurfer] Extracting mean of values within a lable

2019-04-19 Thread Sims, Sara A (Campus)
External Email - Use Caution Hello! I have a surface overlay that I want to extract the mean of the values within a label and export to a text file. How can I do that? I was looking into mris_anatomical_stats, but does mris_anatomical_stats let you tell it what file to pull the d

Re: [Freesurfer] Extracting mean of values within a lable

2019-04-20 Thread Greve, Douglas N.,Ph.D.
look at mri_segstats. Run it with --help to get examples. Note that if your input volume has multiple frames, you can use --avgwf to get means of all the frames On 4/19/2019 4:46 PM, Sims, Sara A (Campus) wrote: External Email - Use Caution Hello! I have a surface overlay that I want to

Re: [Freesurfer] Extracting mean of values within a lable

2019-04-20 Thread Sims, Sara A (Campus)
2:07 PM To: "freesurfer@nmr.mgh.harvard.edu" Subject: Re: [Freesurfer] Extracting mean of values within a lable look at mri_segstats. Run it with --help to get examples. Note that if your input volume has multiple frames, you can use --avgwf to get means of all the frames On 4/19/2019 4:46 PM,

Re: [Freesurfer] Extracting mean of values within a lable

2019-04-20 Thread Greve, Douglas N.,Ph.D.
<mailto:freesurfer@nmr.mgh.harvard.edu> <mailto:freesurfer@nmr.mgh.harvard.edu> Subject: Re: [Freesurfer] Extracting mean of values within a lable look at mri_segstats. Run it with --help to get examples. Note that if your input volume has multiple frames, you can use --avgwf to get m