Re: [Freesurfer] FLAIR vs. T1 question

2024-01-12 Thread Douglas N. Greve
The FLAIR is only used to place the pial surfaces. If you are interested only in WM, then it is not necessary. On 1/3/2024 3:35 PM, aliyas...@yahoo.com wrote: External Email - Use Caution Dear FS mailing list, My apologies if this is a naive question. I have FLAIR images that were a

[Freesurfer] FLAIR vs. T1 question

2024-01-03 Thread aliyas...@yahoo.com
External Email - Use Caution Dear FS mailing list, My apologies if this is a naive question. I have FLAIR images that were acquired with much higher resolution than the T1 images for the same subject. Does it make sense to run recon-all using FLAIR as the input image? I tried it,