Hi Martin
I believe it has been replaced with -autorecon-pial (since some of the
pial surface generation has moved to autorecon3)
cheers
Bruce
On Mon, 17 Jul 2017, Martin
Reuter wrote:
Hi Allison,
seems like autorecon2-pial has been removed from FreeSurfer (also in the cross
sectional s
Hi Allison,
seems like autorecon2-pial has been removed from FreeSurfer (also in the
cross sectional stream). I don't know when, why and what would be the
equivalent command, but someone on the list will know.
About brainmask edits, they are described here:
https://surfer.nmr.mgh.harvard.ed
Hi FreeSurfer Team,
My lab has recently begun editing longitudinal data in version 6 and have found
that we cannot use the same flags for -autorecon2 as we did when running longs
in version 5.1. Typically, after making any necessary edits to a long, we run
-autorecon2-pial -autorecon3. This fla
