Re: [Freesurfer] FS6 recon-all hangs at mris_fix_topology

2017-01-24 Thread Hibert, Matthew Louis
...@nmr.mgh.harvard.edu] on behalf of Bruce Fischl [fis...@nmr.mgh.harvard.edu] Sent: Tuesday, January 24, 2017 9:58 AM To: Freesurfer support list Subject: Re: [Freesurfer] FS6 recon-all hangs at mris_fix_topology Hi Matt looks like you ahve a pretty big (almost 18K vertices) defect. It will eventually

Re: [Freesurfer] FS6 recon-all hangs at mris_fix_topology

2017-01-24 Thread Bruce Fischl
alf of Bruce Fischl > [fis...@nmr.mgh.harvard.edu] > Sent: Tuesday, January 24, 2017 9:58 AM > To: Freesurfer support list > Subject: Re: [Freesurfer] FS6 recon-all hangs at mris_fix_topology > > Hi Matt > looks like you ahve a pretty big (almost 18K vertices) defect. It will >

Re: [Freesurfer] FS6 recon-all hangs at mris_fix_topology

2017-01-24 Thread Bruce Fischl
Hi Matt looks like you ahve a pretty big (almost 18K vertices) defect. It will eventually fix it, but possibly not in the correct way. You can load the lh.inflated.nofix in freeview and theoverlay lh.defect_labels to see what's going on (this is the first defect). It may be that some of the