Re: [Freesurfer] FSFAST_Volume based analysis

2015-05-06 Thread Alshikho, Mohamad J.
PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] FSFAST_Volume based analysis wow, I don't know what is going on here. When I run mkanalysis-sess -mni305 1 It responds as it should: ERROR: must specify either -per-run or -per-session you probably want to use -per-run unles

Re: [Freesurfer] FSFAST_Volume based analysis

2015-05-06 Thread Douglas N Greve
wow, I don't know what is going on here. When I run mkanalysis-sess -mni305 1 It responds as it should: ERROR: must specify either -per-run or -per-session you probably want to use -per-run unless you used -per-session when you ran preproc-sess However, when I cut and paste the "

[Freesurfer] FSFAST_Volume based analysis

2015-05-05 Thread Alshikho, Mohamad J.
Hi Doug, I want to do volume based analysis using FSFAST using the FC seed as a task regressor. I ran the following command lines: 1. preproc-sess -s ${i} -fwhm 5 -surface fsaverage lhrh -mni305-1mm -fsd bold -per-run 2. fcseed-config -segid 1024 -fcname L_Precentralgyrus.dat -fsd bo