Re: [Freesurfer] FSL output overlay

2006-06-08 Thread Doug Greve
What do you mean "to get proper output from reg-feat2anat"? This program produces a freesurfer registration file, which you then check with reg-feat2anat --manual ... doug Vishwadeep Ahluwalia wrote: Hi, To elaborate my problem a little more ... Running FSL command avwhd gave me : filena

[Freesurfer] FSL output overlay

2006-06-08 Thread Vishwadeep Ahluwalia
Hi, To elaborate my problem a little more ... Running FSL command avwhd gave me : filename spiral.nii.gz sizeof_hdr 348 data_type INT16 dim0 4 dim1 64 dim2 64 dim3 25 dim4 250 dim5 1 dim6 1 dim7 1 vox

[Freesurfer] FSL output overlay

2006-06-07 Thread Vishwadeep Ahluwalia
Hi,   I'm a relatively new FS user. Ive a single subject functional dataset analyzed in FSL. I ran recon-all autorecon1 ,2 and 3 on the subject's SPGR. Everything worked fine.  i ran reg-feat2anat to register my functionals to the anatomical but when i hit compare button in tkregister2 , the