Re: [Freesurfer] FSL questions

2019-07-31 Thread Yang, Weiqi
Thank you, Douglas. Best, Weiqi From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Greve, Douglas N.,Ph.D. Sent: Tuesday, July 30, 2019 3:58:20 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] FSL questions I don't know any

Re: [Freesurfer] FSL questions

2019-07-30 Thread Greve, Douglas N.,Ph.D.
I don't know anything about fsleyes or fsl command to extract data. In FS, you can use mri_segstats after resampling the PET to the anatomical space (mri_vol2vol). Use the PET as the --i and the aseg+aparc as the --seg. Alternatively, you could use PETsurfer https://surfer.nmr.mgh.harvard.edu/f

[Freesurfer] FSL questions

2019-07-30 Thread Yang, Weiqi
Dear FreeSurfers, I would like to use fsleyes for imaging. Does anybody know how to source it? And what fsl command I should use if I want to extract all ROIs in aparc+aseg file and get their uptake value from PET image? I know how to do it for a single ROI. I am just wondering if there is an