Re: [Freesurfer] FW: convert (resample) fsaverage/mri/aseg.mgz into $FSLDIR Nifti with MNI152_T1_1mm target - aparc+aseg.mgz problem

2013-11-06 Thread Douglas N Greve
OK, try this cmd mri_vol2vol --mov $FSLDIR/data/standard/MNI152_T1_1mm.nii.gz --targ aseg.mgz --reg transforms/reg.mni152.1mm.dat --o aseg_mni152.nii.gz --inv --interp nearest On 11/05/2013 06:49 PM, Roderick McColl wrote: Sure, no problem. Run from within the folder

[Freesurfer] FW: convert (resample) fsaverage/mri/aseg.mgz into $FSLDIR Nifti with MNI152_T1_1mm target - aparc+aseg.mgz problem

2013-11-05 Thread Roderick McColl
Sure, no problem. Run from within the folder $SUBJECTS/fsaverage/mri :- mri_vol2vol --targ $FSLDIR/data/standard/MNI152_T1_1mm.nii.gz --mov aseg.mgz --reg transforms/reg.mni152.1mm.dat --o aseg_mni152.nii.gz mri_vol2vol --targ $FSLDIR/data/standard/MNI152_T1_1mm.nii.gz --mov aparc+aseg.mgz