[Freesurfer] Failure to convert DICOM files

2012-03-27 Thread Ed Gronenschild
Hi, I got an error during the first step in recon-all (Mac OS 10.6.8, FreeSurfer v5.1.0). The eror message in the log file is: WARNING: file ./MR.1.3.12.2.1107.5.2.18.41016.201008031106017688438785.dcm does not contain a Siemens ASCII header has this file been anonymized? ERROR: cannot unpa

Re: [Freesurfer] Failure to convert DICOM files

2012-03-27 Thread Ed Gronenschild
Hi Jamaan, Yes, I got the same error. Ed On 27 Mar 2012, at 13:36, Jamaan Alghamdi wrote: > Hi Ed, > > Have you tried using mri_convert command directly without running recon-all. > > Best wishes, > Jamaan > > Hi, > > I got an error during the first step in recon-all (Mac OS 10.6.8, > FreeS

Re: [Freesurfer] Failure to convert DICOM files

2012-03-27 Thread Douglas N Greve
Is it a siemens dicom? If so, what happened to the ascii header? Did you do something to the file? What are the contents of the image? Eg, a T1? doug On 03/27/2012 05:35 AM, Ed Gronenschild wrote: > Hi, > > I got an error during the first step in recon-all (Mac OS 10.6.8, > FreeSurfer v5.1.0). Th

Re: [Freesurfer] Failure to convert DICOM files

2012-03-28 Thread Ed Gronenschild
d the dataset. Ed On 28 Mar 2012, at 15:47, freesurfer-requ...@nmr.mgh.harvard.edu wrote: Message: 2 Date: Tue, 27 Mar 2012 12:14:11 -0400 From: Douglas N Greve Subject: Re: [Freesurfer] Failure to convert DICOM files To: freesurfer@nmr.mgh.harvard.edu Message-ID: <4f71e753.3040...@nmr.mgh.har