Re: [Freesurfer] FreeSurfer Errors (2)

2018-10-16 Thread Sparsh Jain
External Email - Use Caution I attached that to the previous email, but it got rejected by the moderator for some reason! Sparsh On Tue, Oct 16, 2018 at 1:03 PM Greve, Douglas N.,Ph.D. < dgr...@mgh.harvard.edu> wrote: > can you send the command-line output as text? > > On 10/16/

Re: [Freesurfer] FreeSurfer Errors (2)

2018-10-16 Thread Greve, Douglas N.,Ph.D.
can you send the command-line output as text? On 10/16/2018 11:12 AM, Sparsh Jain wrote: > > External Email - Use Caution > > Hey! > I sent two responses on Friday. The second response was bigger than 1 > MB so it awaited moderator approval. I don't know if you received it > eventually.

Re: [Freesurfer] FreeSurfer Errors

2018-10-12 Thread Greve, Douglas N.,Ph.D.
On 10/11/18 1:58 PM, Sparsh Jain wrote: External Email - Use Caution Hey! I have recently started using FreeSurfer. I have encountered multiple errors over the past few days, and I would like to mention them all. 1. While testing the installation, the code ran for roughly 4-6 hours a

[Freesurfer] FreeSurfer Errors

2018-10-11 Thread Sparsh Jain
External Email - Use Caution Hey! I have recently started using FreeSurfer. I have encountered multiple errors over the past few days, and I would like to mention them all. 1. While testing the installation, the code ran for roughly 4-6 hours and generated the T1 and wm output im

Re: [Freesurfer] freesurfer errors-windows bash

2017-10-26 Thread Iglesias Gonzalez, Eugenio
Dear Alexandre, It seems that problem is that you need the latest dev version to use this feature. Cheers, /Eugenio -- Juan Eugenio Iglesias ERC Senior Research Fellow Translational Imaging Group University College London http://www.jeiglesias.com http://cmictig.cs.ucl.ac.uk/ From: Alexandre Ob

Re: [Freesurfer] freesurfer errors-windows bash

2017-10-26 Thread Alexandre Obert
Dear Eugenio, The freesurfer version commands tells me that I run the freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c version. Before using segmentHA_T1.sh command, I run the recon-all -all -s bert one and it worked. Of course, recon-all also worked, telling be how to use it properly. R

Re: [Freesurfer] freesurfer errors-windows bash

2017-10-26 Thread Iglesias Gonzalez, Eugenio
urfer@nmr.mgh.harvard.edu" Subject: [Freesurfer] freesurfer errors-windows bash Dear all, I'm would like to run a hippocampal segmentation on my data. However, I'm a beginner with freesurfer thus, I juste try to run the commands with subject training data. I first try to run commands

[Freesurfer] freesurfer errors-windows bash

2017-10-26 Thread Alexandre Obert
Dear all, I'm would like to run a hippocampal segmentation on my data. However, I'm a beginner with freesurfer thus, I juste try to run the commands with subject training data. I first try to run commands following the recent development ( https://surfer.nmr.mgh.harvard.edu/fswiki/HippocampalSubfi

[Freesurfer] Freesurfer errors on using .nii images

2015-04-21 Thread Atif Adam
Good afternoon, We are trying to use Freesurfer to work out NifTi images are on using recon script run into this error message below. . It doesn't seem to move past motion correction in the run. Any input will be greatly appreciated! Adam [mcarlsonspronew:/] m_carlson% recon-all -i