Re: [Freesurfer] FreeSurfer v6.0 in an AWS cloud configuration (hipposubfield/brainstem failures)

2017-03-03 Thread randrews
rateIntel Xeon E5-2680 v22.8Yes-Yes-Yesc3.xlarge47.52 x 40 SSDModerateIntel Xeon E5-2680 v22.8Yes-YesYesYesc3.2xlarge8152 x 80 SSDHighIntel Xeon E5-2680 v22.8Yes-YesYesYes Re: [Freesurfer] FreeSurfer v6.0 in an AWS cloud configuration (hipposubfield/brainstem failures)Anto

Re: [Freesurfer] FreeSurfer v6.0 in an AWS cloud configuration (hipposubfield/brainstem failures)

2017-03-02 Thread Antonin Skoch
Dear Randy, from the log file you provided it seems that both of your jobs exited on the insufficient RAM. You should check your available RAM resources. brainstem-structures: std::bad_alloc hippocampal subfiels: Out of memory. Regards, Antonin Hello FreeSurfer Experts/Community, I a

[Freesurfer] FreeSurfer v6.0 in an AWS cloud configuration (hipposubfield/brainstem failures)

2017-03-02 Thread randrews
Hello FreeSurfer Experts/Community,I am currently working with NITRC (as a novice user) to build and investigate the operability of FreeSurfer v6.0 in their Computational Environment (NITRC-CE).We have been able to get a "recon-all" run to work, but we are failing to get the sub-calls -hippocampal-