Re: [Freesurfer] Freesurfer, Matlab and Maverick

2014-02-03 Thread Douglas N Greve
permission denied"??? What > should I do next? > > > Many thanks, > > > > > DH > > > > > > From: sebastian.moell...@rwth-aachen.de > > Date: Sun, 26 Jan 2014 16:33:40 +0100 > > To: gr...@nmr.mgh.harvard.edu > > CC: freesurfer@nmr.mgh.harvard.

Re: [Freesurfer] Freesurfer, Matlab and Maverick

2014-02-03 Thread Dusan Hirjak
ould I do next? Many thanks, DH > From: sebastian.moell...@rwth-aachen.de > Date: Sun, 26 Jan 2014 16:33:40 +0100 > To: gr...@nmr.mgh.harvard.edu > CC: freesurfer@nmr.mgh.harvard.edu > Subject: Re: [Freesurfer] Freesurfer, Matlab and Maverick > > Hi Dusan, > >

Re: [Freesurfer] Freesurfer, Matlab and Maverick

2014-01-28 Thread Z K
> > > > Date: Fri, 24 Jan 2014 17:07:08 -0500 > > From: zkauf...@nmr.mgh.harvard.edu > > To: dusanhir...@hotmail.com; freesurfer@nmr.mgh.harvard.edu > > Subject: Re: [Freesurfer] Freesurfer, Matlab and Maverick > > > > Hello Dusan, > > > > Are you

Re: [Freesurfer] Freesurfer, Matlab and Maverick

2014-01-26 Thread Sebastian Moeller
uot;command not found" is the answer. >> >> I guess your hypothesis is true and the matlab binary is not in my path. Why >> not? What should I do next? >> >> Thanks a lot! >> >> DH >> >> >> > Subject: Re: [Freesurfer] Freesurfer

Re: [Freesurfer] Freesurfer, Matlab and Maverick

2014-01-26 Thread Douglas Greve
nd" is the answer. I guess your hypothesis is true and the matlab binary is not in my path. Why not? What should I do next? Thanks a lot! DH > Subject: Re: [Freesurfer] Freesurfer, Matlab and Maverick > From: sebastian.moell...@rwth-aachen.de > Date: Sun, 26 Jan 2014 10:33:3

Re: [Freesurfer] Freesurfer, Matlab and Maverick

2014-01-26 Thread Dusan Hirjak
:-( "command not found" is the answer. I guess your hypothesis is true and the matlab binary is not in my path. Why not? What should I do next? Thanks a lot! DH > Subject: Re: [Freesurfer] Freesurfer, Matlab and Maverick > From: sebastian.moell...@rwth-aachen.de > Date: Sun, 26 J

Re: [Freesurfer] Freesurfer, Matlab and Maverick

2014-01-26 Thread Sebastian Moeller
Hi Dusan, (I saw your PN earlier but had no idea and hence did not reply). But this has more information, so I try again ;) On Jan 25, 2014, at 02:00 , Dusan Hirjak wrote: > Dear Freesurferexperts, > > I still have the Problem because I can not run the the mris-command to > estimate the gyri

Re: [Freesurfer] Freesurfer, Matlab and Maverick

2014-01-24 Thread Dusan Hirjak
Dear Freesurferexperts, I still have the Problem because I can not run the the mris-command to estimate the gyrification-index, because Freesurfer is not recognizing Matlab: "ERROR: Matlab is required to run mris_compute_lgi"Im not sure why this is happening? Does someone have an idea??? Im star

Re: [Freesurfer] Freesurfer, Matlab and Maverick

2014-01-24 Thread Dusan Hirjak
Hi Zeke, I have one more question: It seems that I did not copied the the "recommended lines" from thehomepage to matlab startup-file correct. when I type "recon-all -lgi -s G01" Im getting the following message: ERROR: Matlab is required to run mris_compute_lgi! When Im trying to run Qdec, the

Re: [Freesurfer] Freesurfer, Matlab and Maverick

2014-01-24 Thread Dusan Hirjak
Fri, 24 Jan 2014 17:07:08 -0500 > From: zkauf...@nmr.mgh.harvard.edu > To: dusanhir...@hotmail.com; freesurfer@nmr.mgh.harvard.edu > Subject: Re: [Freesurfer] Freesurfer, Matlab and Maverick > > Hello Dusan, > > Are you sure you typed the entire command? Because your sys

Re: [Freesurfer] Freesurfer, Matlab and Maverick

2014-01-24 Thread Z K
H > > > > > > > > > > > Date: Fri, 24 Jan 2014 11:35:17 -0500 > > From: zkauf...@nmr.mgh.harvard.edu > > To: dusanhir...@hotmail.com; freesurfer@nmr.mgh.harvard.edu > > Subject: Re: [Freesurfer] Freesurfer, Matlab and Maverick > > > > Hello

Re: [Freesurfer] Freesurfer, Matlab and Maverick

2014-01-24 Thread Dusan Hirjak
es (ARM64 objects only) What should I do next to be able to use Freesurfer and Matlab on Maverick??? Many thanks!!! DH > Date: Fri, 24 Jan 2014 11:35:17 -0500 > From: zkauf...@nmr.mgh.harvard.edu > To: dusanhir...@hotmail.com; freesurfer@nmr.mgh.harvard.edu > Subject: Re: [F

Re: [Freesurfer] Freesurfer, Matlab and Maverick

2014-01-24 Thread Z K
Hello Dusan, When you say you installed "X11 (2.7.5)" does that mean you've installed the latest version of XQuartz (http://xquartz.macosforge.org/landing/)? If not, please do that first. If you installed XQuartz, than can you please type the following on the command line and provide me with t

[Freesurfer] Freesurfer, Matlab and Maverick

2014-01-24 Thread Dusan Hirjak
Dear experts, it seems that after the new apple update "Maverick" Matlab can not get access to Freesurfer. I already added the "recommended lines" from the homepage to matlab startup-file, but it is still not working. Im trying to estimate the local gyrification index. However when I type "reco