Hi Christine, yes, your interpretation is correct. The -3T flag only
applied when using the mni tools, so it has no effect with ANTS. What
was the nature of the failure? We might be able to tweak the ANTS
command line to improve it.
doug
On 11/15/2021 12:52 PM, Notestine, Christine wrote:
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We recently moved to FreeSurfer 7.1.1 running it on ~ 100 different
types of cases using the -3T options, but after a case failure, we looked
deeper into the v7.x changes related to bias correction, and it seems that
using the -3T option did n
