pefully freeview will run... or at least throw a
> different error
>
> best
> Andrew
>
> From: Hoopes, Andrew
> Sent: Tuesday, September 19, 2017 1:56 PM
> To: Freesurfer support list
> Subject: Re: [Freesurfer] Freeview aborts under centos6
Hi Andrew,
Thank you!
Here is the output of bugr
> [gschwind@login1 ~]$ bugr
> Cut-and-paste the following info into your FreeSurfer problem report:
> -
> FREESURFER_HOME: /opt/ebsofts/Core/FreeSurfer/5.3.0-centos6_x86_64
> Bui
Hi Markus, okay - I'll directly send you a tar of the vtk library. A reinstall
of vtk might work, because those shared objects that we distribute are usually
sym-linked
Can you also send the fs buildstamp? You can get this by running the command
‘bugr’ after sourcing freesurfer
Andrew
On Sep
Dear Andrew,
after the System admin executed your proposed commands, it stays the same,
Freeview aborts.
Is there anything else we could try?
Thank you and best wishes,
Markus
2017-09-15 20:06 GMT+02:00 Hoopes, Andrew :
> Hm okay thanks - I’m curious what happens when you run:
>
> cd $FREESUR
Thanks, I gave this to the system admin as I do not ave the sudo rights.
I’ll come back!
Best, Markus
> On 15 Sep 2017, at 20:06, Hoopes, Andrew wrote:
>
> Hm okay thanks - I’m curious what happens when you run:
>
> cd $FREESURFER_HOME/lib/vtk/lib/vtk-5.6
> # backup the shared objects
> mv l
Hm okay thanks - I’m curious what happens when you run:
cd $FREESURFER_HOME/lib/vtk/lib/vtk-5.6
# backup the shared objects
mv libvtkverdict.so libvtkverdict.so.bk
mv libvtkverdict.so.5.6 libvtkverdict.so.5.6.bk
# link them to 5.6
ln -s libvtkverdict.so.5.6.0 libvtkverdict.so
ln -s libvtkverdict.s
Dear Andrew,
The command gives this result:
[gschwind@login1 ~]$ /sbin/ldconfig -N -v $(sed 's/:/ /' <<<
> $LD_LIBRARY_PATH) | grep libvtkverdict.so
> /sbin/ldconfig: Can't stat
> /usr/lib/jvm/java-1.7.0-openjdk-1.7.0.71.x86_64/jre/lib/amd64/server: No
> such file or directory
> /sbin/ldconfig: /
Hi Markus,
What is the output when you run the following: (this will list libraries you
have access to)
/sbin/ldconfig -N -v $(sed 's/:/ /' <<< $LD_LIBRARY_PATH) | grep
libvtkverdict.so
best,
Andrew
On Sep 15, 2017, at 3:33 AM, Markus Gschwind
mailto:markus.gschw...@gmail.com>> wrote:
Hi ex
Dear experts,
I am installing freeusrfer on our cluster which is running Centos6.
[gschwind@login1 ~]$ uname -a
Linux login1.cluster 2.6.32-696.1.1.el6.x86_64 #1 SMP Tue Apr 11 17:13:24
UTC 2017 x86_64 x86_64 x86_64 GNU/Linux
Freeview aborts without any other complaint.
[gschwind@login1 ~]$ fr
Hi experts,
I am installing freeusrfer on our cluster which is running Centos6.
[gschwind@login1 ~]$ uname -a
Linux login1.cluster 2.6.32-696.1.1.el6.x86_64 #1 SMP Tue Apr 11 17:13:24
UTC 2017 x86_64 x86_64 x86_64 GNU/Linux
Freeview aborts without any other complaint.
[gschwind@login1 ~]$ free
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