[Freesurfer] Freeview colorbar with command line & white background?

2015-02-06 Thread Xiuming Zhang
Dear freesurfer experts, I have two quick questions regarding freeview. (1) The color bar is still from 0 to 1 even if I am overlying a super small-valued (1e-6) map on lh.inflated. Here is what I did: freeview -f lh.inflated:overlay=lh.map:overlay_method=linear:edgethickness=0 -viewport 3d -col

Re: [Freesurfer] Freeview colorbar with command line & white background?

2015-02-06 Thread Ruopeng Wang
Hi Xiuming, You can’t change color scale or change the background color from the command-line. You can change the background color from the GUI: Edit -> Preferences. I will add these options in the command-line. Best, Ruopeng On Feb 6, 2015, at 11:52 AM, Xiuming Zhang wrote: > Dear freesurfe

Re: [Freesurfer] Freeview colorbar with command line & white background?

2015-02-06 Thread Xiuming Zhang (Ming)
Hi Ruopeng, Thanks a lot for helping clarify this! May I ask a follow-up question? Why am I getting a symmetric-around-0 colorbar (please see the attachment)? I only have values from 3.99e-6 to 1.2e-5. Thank you very much! Best regards, Xiuming (Ming)_

Re: [Freesurfer] Freeview colorbar with command line & white background?

2015-02-07 Thread Ruopeng Wang
Hi Xiuming, I think the color scale always display the full scale which includes the inverted part. I understand it is not ideal in this case. I will improve it. Best, Ruopeng On Feb 6, 2015, at 8:26 PM, Xiuming Zhang (Ming) wrote: > Hi Ruopeng, > > Thanks a lot for helping clarify this! >

Re: [Freesurfer] Freeview colorbar with command line & white background?

2015-02-07 Thread Xiuming Zhang (Ming)
Hi Ruopeng, Thank you very much for the verification. That is no problem at all. I was asking because I thought I did something wrong. :-) It is quite easy for myself to only save the positive part. Thank you very much! Best regards, Xiuming > On Feb 7, 2015, at 10:14 PM, Ruopeng Wang wrote