Re: [Freesurfer] Freeview misaligned surfaces "warning matrixinverse failed"

2023-10-17 Thread Marina Fernández
External Email - Use Caution Hi Andrei, I was referring to .bashrc file located in these directories: /root/.bashrc /home/'your_user'/.bashrc ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu

Re: [Freesurfer] Freeview misaligned surfaces "warning matrixinverse failed"

2023-10-17 Thread Andrei Bieger
External Email - Use Caution Indeed, the /usr/local/freesurfer/.bashrc file is empty Trying to set the FS_DISABLE_LANG to true or false also had no consequences. But thank you, anyway. Andrei Em ter., 17 de out. de 2023 às 07:45, fsbuild escreveu: > > From what I can see, the

Re: [Freesurfer] Freeview misaligned surfaces "warning matrixinverse failed"

2023-10-17 Thread fsbuild
External Email - Use Caution From what I can see, the freesurfer release 7 installers do not modify the shell init file, e.g., bashrc, and neither did the VM provided in the past with freesurfer 7.2.0 pre-installed have an entry with FS_DISABLE_LANG set in the bashrc file. - R.

Re: [Freesurfer] Freeview misaligned surfaces "warning matrixinverse failed"

2023-10-17 Thread Marina Fernández
External Email - Use Caution Hi Andrei and Freesurfer experts, We had the same problem in the past and we noticed there was an extra line in the .bashrc file of Ubuntu: export FS_DISABLE_LANG="true" Deleting this line solves the problem. The .bashrc file should contain only the

Re: [Freesurfer] Freeview misaligned surfaces "warning matrixinverse failed"

2023-10-16 Thread Andrei Bieger
ust fine at my university desktop. >> The problem is with my laptop, and I can't figure it out. >> >> >> >> Best, >> >> Andrei >> >> >> >> Em seg., 16 de out. de 2023 às 08:37, Huang, Yujing < >> yhuan...@mgh.harvard.e

Re: [Freesurfer] Freeview misaligned surfaces "warning matrixinverse failed"

2023-10-16 Thread Wang, Ruopeng
<mailto:freesurfer-boun...@nmr.mgh.harvard.edu> mailto:freesurfer-boun...@nmr.mgh.harvard.edu>> On Behalf Of Andrei Bieger Sent: Monday, October 16, 2023 10:25 AM To: Freesurfer support list mailto:freesurfer@nmr.mgh.harvard.edu>> Subject: Re: [Freesurfer] Freeview misaligned sur

Re: [Freesurfer] Freeview misaligned surfaces "warning matrixinverse failed"

2023-10-16 Thread Wang, Ruopeng
Would it be possible to send us the volume and the surface files? If the volume geometric info from the surface is missing or wrong, it would be unlikely to align with the volume. Ruopeng On Oct 15, 2023, at 11:06 AM, Andrei Bieger mailto:andreibie...@gmail.com>> wrote: External