[Freesurfer] Fwd: A Question Regarding Topology Correction

2019-07-11 Thread Maedeh Khalilian
External Email - Use Caution From: "Maedeh Khalilian" To: "freesurfer@nmr.mgh.harvard.edu" Date: Thu, 11 Jul 2019 07:37:05 +0430 Subject: A Question Regarding Topology Correction Dear FreeSurfer experts, I know that FreeSurfer does segmentation, surface reconstruction

Re: [Freesurfer] Fwd: A Question Regarding Topology Correction

2019-07-11 Thread Bruce Fischl
Hi Maedeh in principle you can, although it would be a lot easier if you just had a reasonable quality T1. If not, you will need to create all the files that recon-all expects to exist prior to the topology correction step (wm.mgz, norm.mgz, orig.mgz, ). Maybe the easiest thing to do would