Re: [Freesurfer] Fwd: Running Tracula: trac-preproc exited with ERRORS

2012-12-11 Thread s0675204
Thank you so much! All (?) makes sense now that I am looking at the log files. It has actually only processed 6 (out of 102). Now I am trying to figure out why it skipped the ones it did best wishes, Prerona On 10 December 2012 20:33, s0675204 s0675...@sms.ed.ac.uk wrote: okay. i will look

Re: [Freesurfer] Fwd: Running Tracula: trac-preproc exited with ERRORS

2012-12-10 Thread s0675204
Hello My trac- preproc has completed. However, I am confused about the status message. It says: #- trac-preproc finished without error at Mon Dec 10 16:32:20 EST 2012 ERROR: cannot find /home/canlilab/SBU/data/recon_output/00387 Does this mean it was

Re: [Freesurfer] Fwd: Running Tracula: trac-preproc exited with ERRORS

2012-12-10 Thread Anastasia Yendiki
I'm guessing that this shows up in the scripts/trac-all.log of a particular subject? Then it applies to that subject. On Mon, 10 Dec 2012, s0675204 wrote: Hello My trac- preproc has completed. However, I am confused about the status message. It says: #-

Re: [Freesurfer] Fwd: Running Tracula: trac-preproc exited with ERRORS

2012-12-07 Thread Anastasia Yendiki
Yes, I can see that each of the bvecs/bvals files is one long line. Was that the case for the original files that you specified in the dmrirc? On Fri, 7 Dec 2012, s0675204 wrote: Hi Anastasia I had attached the files, but maybe they did not go through to the mailing list? So I am sending

Re: [Freesurfer] Fwd: Running Tracula: trac-preproc exited with ERRORS

2012-12-07 Thread Anastasia Yendiki
I see. Can you try formatting them in columns (1 column for the bvals and 3 columns for the bvecs)? On Fri, 7 Dec 2012, s0675204 wrote: yes! these are the original files well these are the files i pointed to in my config file. and i think the script copies them over to the dmrirc folder?