Great, thanks!
On Mon, Apr 11, 2011 at 6:59 AM, Douglas N Greve
wrote:
> In version 5 there is actually already a flag for this in bbregister. Try
> running it with --spm-nii.
> doug
>
> Tyler Seibert wrote:
>
>> Thanks, Doug and Michael--that did the trick! What is the status of this
>> issue fo
In version 5 there is actually already a flag for this in bbregister.
Try running it with --spm-nii.
doug
Tyler Seibert wrote:
> Thanks, Doug and Michael--that did the trick! What is the status of
> this issue for newer versions of FreeSurfer (e.g., 5.0)?
>
> Tyler
>
> On Tue, Mar 29, 2011 at 8
Thanks, Doug and Michael--that did the trick! What is the status of this
issue for newer versions of FreeSurfer (e.g., 5.0)?
Tyler
On Tue, Mar 29, 2011 at 8:17 AM, Douglas Greve wrote:
>
> As Michael says, with spm8 you have to use nifti. When 4.5 was written,
> spm8 was not around (or not used
As Michael says, with spm8 you have to use nifti. When 4.5 was written,
spm8 was not around (or not used much), so this was never a problem. One
way you can get around it is to modify your copy of spmregister (in
$FREESURFER_HOME/bin). There is a line in there that indicates the
format to use
Hi Michael,
Thank you for your help! I tried the --spm-nii option you suggested, but it
causes an error:
ERROR: Flag --spm-nii unrecognized.
>
Also, that option is not listed in the output of bbregister --help on my
system (I am using version 4.5, build-stamp.txt:
freesurfer-Linux-centos4_x86_64
Hi Tyler,
Doug can correct me if I'm wrong, but I believe if you use the --spm-nii
option it will fix this.
Cheers,
Michael
On Mon, Mar 28, 2011 at 1:47 PM, Tyler Seibert wrote:
> Screenshot2 attached
>
>
> -- Forwarded message --
> From: Tyler Seibert
> Date: Thu, Mar 17, 201
