[Freesurfer] Fwd: error when using stats import in qdec

2013-02-12 Thread Catherine Bois
Dear all, I have a question; I am trying to load data into qdec; the data table is loaded fine (although it lists age as continuous for some region, rather than discreet). However, When i try to generate the stats table, this error comes up. Does this mean I somehow have to manually set

Re: [Freesurfer] Fwd: error when using stats import in qdec

2013-02-12 Thread Catherine Bois
Sorry, just to clarify; it lists age as a discreet variable rather than continuous for some reason, not the other way round as I accidentally wrote=) Regards Quoting Catherine Bois c.b...@sms.ed.ac.uk on Tue, 12 Feb 2013 14:58:45 +: Dear all, I have a question; I am trying to

Re: [Freesurfer] Fwd: error when using stats import in qdec

2013-02-12 Thread Nick Schmansky
Catherine, Is your SUBJECTS_DIR enviro var setup properly prior to starting qdec? That is, set to your own writable subjects directory? I noticed in the error message that it looks like the subjects dir is the default one under the /freesurfer dir, which is read-only. One option is to put this

Re: [Freesurfer] Fwd: error when using stats import in qdec

2013-02-12 Thread Nick Schmansky
Catherine, Thats odd, can you email me your qdec.table.dat file? qdec parses 'discretes' if they're non-numerical, so maybe there is a stray character thats messing it up. Nick Sorry, just to clarify; it lists age as a discreet variable rather than continuous for some reason, not the other