Re: [Freesurfer] GCA atlas defined anatomical boundaries

2013-07-24 Thread Bruce Fischl
Hi Zuzana 1. the subcortical segmentations are based on the protocol defined by the Center for Morphometric Analysis at MGH, so you will need to look at their papers for e.g. hippocampus/amygdala segmentations 2. You should check with the CMA, but I believe it refers to cases with a cavum se

[Freesurfer] GCA atlas defined anatomical boundaries

2013-07-24 Thread Zuzana Nedelska
Hello, I have attended short FSL/FreeSurfer course in New Zealand last year and have subscribed for mailing list, but in spite of all that I would I would appreciate very much to know. 1.) 1.)how GCA atlas that is used by FreeSurfer defines boundaries of subcortical volumes (especially amygda