Re: [Freesurfer] Help running freesurfer for FEAT-preprocessed functional data?

2023-08-21 Thread Douglas N. Greve
External Email - Use Caution There is no way to do this. All the fsfast commands are going to expect things to be in the fsfast directory structure. On 8/11/2023 12:19 PM, Noah Lee wrote: External Email - Use Caution Hello! I am trying to run some freesurfer commands

[Freesurfer] Help running freesurfer for FEAT-preprocessed functional data?

2023-08-11 Thread Noah Lee
External Email - Use Caution Hello! I am trying to run some freesurfer commands for a pipeline. However, I am coming in with functional data preprocessed by FEAT (EPI correction and general mcflirt, etc). For reference, I'm trying to run this following script: preproc-sess -s .