Re: [Freesurfer] Help segmenting all subjects in a folder

That does not apply to the recon-all command, only to mri_segment_hypothalamus_subunits On 7/1/2021 12:23 PM, g.ton...@libero.it wrote: External Email - Use Caution Hello FreeSurfer Developers, Thank you for your work ! I successfully set up Freesurfer and ran a test on my computer,

[Freesurfer] Help segmenting all subjects in a folder

External Email - Use Caution Hello FreeSurfer Developers, Thank you for your work ! I successfully set up Freesurfer and ran a test on my computer, and I am now attempting to run recon-all on all subjects in a folder ("/home/users/s/saccaro/Groupe_0" in the example script below