|
Hi FS experts,
I've been running into numerous issues trying to run the new amygdala and hippocampal analysis. I processed my data with v6.0 and obtained the 12 subfield measures with the v6.0. I have tried to add the new amygdala and subfield measures from the dev verion but am now getting the following error (see below). I'm running my analysis on a clutser. Any pointers on how to reslve the issue would be very much appreciated. Thanks Erik #-------------------------------------------- #@# Hippocampal Subfields processing (T1+T2) left Fri Jan 26 20:00:15 GMT 2018 ------------------------------------------ Setting up environment variables --- LD_LIBRARY_PATH is .:/home/support/tcin/apps/freesurfer/6-dev-20180122/freesurfer/MCRv84//runtime/glnxa64:/home/support/tcin/apps/freesurfer/6-dev-20180122/freesurfer/MCRv84//bin/glnxa64:/home/support/tcin/apps/freesurfer/6-dev-20180122/freesurfer/MCRv84//sys/os/glnxa64:/home/support/tcin/apps/freesurfer/6-dev-20180122/freesurfer/lib/vtk/lib/vtk-5.6:/home/support/apps/libs/qwt/6.1.3/lib:/home/support/apps/cports/rhel-6.x86_64/gnu/vtk/5.10.1/lib:/home/support/apps/cports/rhel-6.x86_64/gnu/Python/2.7.12/lib:/home/support/apps/cports/rhel-6.x86_64/gnu/tcl/8.5.19/lib:/home/support/tcin/apps/freesurfer/6-dev-20180122/freesurfer/MCRv84//sys/opengl/lib/glnxa64:/home/support/tcin/apps/freesurfer/6-dev-20180122/freesurfer/lib/vtk/lib/vtk-5.6:/home/support/apps/libs/qwt/6.1.3/lib:/home/support/apps/cports/rhel-6.x86_64/gnu/vtk/5.10.1/lib:/home/support/apps/cports/rhel-6.x86_64/gnu/Python/2.7.12/lib:/home/support/apps/cports/rhel-6.x86_64/gnu/tcl/8.5.19/lib Invalid MEX-file '/tmp/MCR_2152662503/.mcrCache8.4/segmen0/autofs/space/panamint_005/users/iglesias/software/freesurfer.GEMS2/bin/kvlGEMSMatlab.mexa64': /lib64/libc.so.6: version `GLIBC_2.14' not found (required by /tmp/MCR_2152662503/.mcrCache8.4/segmen0/autofs/space/panamint_005/users/iglesias/software/freesurfer.GEMS2/bin/kvlGEMSMatlab.mexa64) Error in kvlClear (line 11) Error in segmentSubjectT1T2_autoEstimateAlveusML (line 135) MATLAB:invalidMEXFile @#@FSTIME 2018:01:26:20:00:15 run_segmentSubjectT1T2_autoEstimateAlveusML.sh N 17 e 29.68 S 1.22 U 11.13 P 41% M 844112 F 2 R 51746 W 0 c 95 w 9198 I 304 O 83584 L 0.00 0.00 0.00 @#@FSLOADPOST 2018:01:26:20:00:45 run_segmentSubjectT1T2_autoEstimateAlveusML.sh N 17 0.39 0.09 0.03 Linux lonsdale-n148.cluster 2.6.32-696.18.7.el6.x86_64 #1 SMP Wed Jan 3 19:31:16 CST 2018 x86_64 x86_64 x86_64 GNU/Linux T2 hippocampal subfields exited with ERRORS at Fri Jan 26 20:00:45 GMT 2018
Erik O'Hanlon
RCSI Psychiatry
RCSI DEVELOPING HEALTHCARE LEADERS
|
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
